Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs140611544 chr7:148991489 G/GAGAGA 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs1412632 chr1:197036868 G/A 4.32E-7 405 5.8 17.77 14.07 KM Plot
STAD rs1412633 chr1:197027220 C/G 5.76E-9 406 6.03 16.67 14.2 KM Plot
STAD rs1412634 chr1:197023156 T/C 9.24E-6 404 5.28 16.52 14.22 KM Plot
STAD rs142728569 chr1:227432983 ATCTTTTTTTT/A 0 405 14.25 14.67 1.48 KM Plot
STAD rs142893535 chr1:227392777 T/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs144473177 chr1:227270308 C/T 0 406 14.32 14.15 1.48 KM Plot
STAD rs145126991 chr1:227297415 TTTTA/T 0 404 14.32 14.15 1.48 KM Plot
STAD rs146080152 chr1:227449748 G/GA 0 404 14.25 14.45 1.48 KM Plot
STAD rs146295817 chr1:227410220 C/CA 0 405 14.27 14.23 1.48 KM Plot
STAD rs1464076 chr1:227454131 G/A 0 404 14.27 14.23 1.48 KM Plot
STAD rs1464077 chr1:227454219 G/A 0 404 14.25 14.45 1.48 KM Plot
STAD rs146450821 chr4:53664039 G/A 2.82E-6 398 14.07 18.53 6.17 KM Plot
STAD rs1467262 chr17:72894871 T/C 1.53E-5 404 6.27 21.17 14.13 KM Plot
STAD rs147090220 chr7:148941245 T/TG 5.13E-5 403 14.2 15.87 3.43 KM Plot